Index

_

_empty_arm_swing_df() (in module paradigma.pipelines.gait_pipeline)

_empty_gait_quantification_df() (in module paradigma.orchestrator) _update_sampling_dependent_params() (paradigma.config.PulseRateConfig method)

A

ABSOLUTE_MS (paradigma.constants.TimeUnit attribute) ABSOLUTE_S (paradigma.constants.TimeUnit attribute) ACC_POWER_RATIO (paradigma.constants.DataColumns attribute) ACCELERATION (paradigma.constants.DataUnits attribute) acceleration_units (paradigma.config.IMUConfig attribute) accelerometer_colnames (paradigma.config.IMUConfig attribute) (paradigma.config.PulseRateConfig attribute) ACCELEROMETER_X (paradigma.constants.DataColumns attribute) ACCELEROMETER_Y (paradigma.constants.DataColumns attribute) ACCELEROMETER_Z (paradigma.constants.DataColumns attribute) aggregate_arm_swing_params() (in module paradigma.pipelines.gait_pipeline)

aggregate_parameter() (in module paradigma.util) aggregate_pulse_rate() (in module paradigma.pipelines.pulse_rate_pipeline) aggregate_pulse_rate_io() (in module paradigma.testing) aggregate_tremor() (in module paradigma.pipelines.tremor_pipeline) aggregate_tremor_io() (in module paradigma.testing) aggregates_tremor_power (paradigma.config.TremorConfig attribute) ANGLE (paradigma.constants.DataColumns attribute) angle_fmax (paradigma.config.GaitConfig attribute) angle_fmin (paradigma.config.GaitConfig attribute) assign_sqa_label() (in module paradigma.pipelines.pulse_rate_utils) axes (paradigma.config.IMUConfig attribute)

B

bandwidth (paradigma.config.PulseRateConfig attribute) BaseConfig (class in paradigma.config)

BELOW_TREMOR_POWER (paradigma.constants.DataColumns attribute) biased_autocorrelation() (in module paradigma.feature_extraction) butterworth_filter() (in module paradigma.preprocessing)

C

categorize_segments() (in module paradigma.segmenting) classifier (paradigma.classification.ClassifierPackage attribute) ClassifierPackage (class in paradigma.classification) column_indices (paradigma.segmenting.WindowedDataExtractor attribute), [1] column_mapping (paradigma.config.IMUConfig attribute) (paradigma.config.PPGConfig attribute) compute_angle() (in module paradigma.feature_extraction) compute_auto_correlation() (in module paradigma.feature_extraction) compute_dominant_frequency() (in module paradigma.feature_extraction) compute_forward_backward_peak_angular_velocity() (in module paradigma.feature_extraction) compute_mfccs() (in module paradigma.feature_extraction) compute_peak_angular_velocity() (in module paradigma.feature_extraction) compute_power_in_bandwidth() (in module paradigma.feature_extraction)

compute_range_of_motion() (in module paradigma.feature_extraction) compute_relative_power() (in module paradigma.feature_extraction) compute_signal_to_noise_ratio() (in module paradigma.feature_extraction) compute_spectral_entropy() (in module paradigma.feature_extraction) compute_statistics() (in module paradigma.feature_extraction) compute_std_euclidean_norm() (in module paradigma.feature_extraction) compute_tfd() (paradigma.pipelines.pulse_rate_utils.TimeFreqDistr method) compute_total_power() (in module paradigma.feature_extraction) convert_sensor_units() (in module paradigma.prepare_data) convert_units_accelerometer() (in module paradigma.util) convert_units_gyroscope() (in module paradigma.util) correct_watch_orientation() (in module paradigma.prepare_data) create_segments() (in module paradigma.segmenting)

D

d_channels_accelerometer (paradigma.config.IMUConfig attribute) d_channels_gyroscope (paradigma.config.IMUConfig attribute) d_channels_imu (paradigma.config.IMUConfig attribute) d_channels_ppg (paradigma.config.PPGConfig attribute) d_channels_values (paradigma.config.GaitConfig attribute) d_frequency_bandwidths (paradigma.config.GaitConfig attribute) DATA_SEGMENT_NR (paradigma.constants.DataColumns attribute) DataColumns (class in paradigma.constants) DataUnits (class in paradigma.constants) deprecated() (in module paradigma.util)

DETAILED_INFO (in module paradigma.orchestrator) detect_file_format() (in module paradigma.load) detect_gait() (in module paradigma.pipelines.gait_pipeline) detect_gait_io() (in module paradigma.testing) detect_tremor() (in module paradigma.pipelines.tremor_pipeline) detect_tremor_io() (in module paradigma.testing) DIFFERENCE_MS (paradigma.constants.TimeUnit attribute) DIFFERENCE_S (paradigma.constants.TimeUnit attribute) discard_segments() (in module paradigma.segmenting) DOMINANT_FREQUENCY (paradigma.constants.DataColumns attribute)

E

estimate_pulse_rate() (in module paradigma.pipelines.pulse_rate_pipeline) evaluation_points_tremor_power (paradigma.config.TremorConfig attribute) extract_acc_power_feature() (in module paradigma.pipelines.pulse_rate_pipeline) extract_accelerometer_feature() (in module paradigma.pipelines.pulse_rate_pipeline) extract_angle_extremes() (in module paradigma.feature_extraction) extract_arm_activity_features() (in module paradigma.pipelines.gait_pipeline) extract_arm_activity_features_io() (in module paradigma.testing) extract_frequency_peak() (in module paradigma.feature_extraction) extract_gait_features() (in module paradigma.pipelines.gait_pipeline) extract_gait_features_io() (in module paradigma.testing) extract_overlapping_segments() (in module paradigma.preprocessing) extract_pr_from_segment() (in module paradigma.pipelines.pulse_rate_utils)

extract_pr_segments() (in module paradigma.pipelines.pulse_rate_utils) extract_pr_with_tfd() (in module paradigma.pipelines.pulse_rate_utils) extract_signal_quality_features() (in module paradigma.pipelines.pulse_rate_pipeline) extract_signal_quality_features_io() (in module paradigma.testing) extract_spectral_domain_features() (in module paradigma.pipelines.gait_pipeline) (in module paradigma.pipelines.pulse_rate_pipeline) (in module paradigma.pipelines.tremor_pipeline) extract_temporal_domain_features() (in module paradigma.pipelines.gait_pipeline) (in module paradigma.pipelines.pulse_rate_pipeline) extract_tremor_features() (in module paradigma.pipelines.tremor_pipeline) extract_tremor_features_io() (in module paradigma.testing) extract_tremor_power() (in module paradigma.feature_extraction)

F

filter_gait() (in module paradigma.pipelines.gait_pipeline) filter_gait_io() (in module paradigma.testing) filter_order (paradigma.config.IMUConfig attribute) (paradigma.config.PPGConfig attribute) fmax_below_rest_tremor (paradigma.config.TremorConfig attribute) fmax_mfcc (paradigma.config.TremorConfig attribute) fmax_peak_search (paradigma.config.TremorConfig attribute) fmax_rest_tremor (paradigma.config.TremorConfig attribute)

fmin_below_rest_tremor (paradigma.config.TremorConfig attribute) fmin_mfcc (paradigma.config.TremorConfig attribute) fmin_peak_search (paradigma.config.TremorConfig attribute) fmin_rest_tremor (paradigma.config.TremorConfig attribute) format_datetime_to_iso8601() (in module paradigma.util) freq_band_physio (paradigma.config.PulseRateConfig attribute) freq_bin_resolution (paradigma.config.PulseRateConfig attribute) FREQ_PEAK (paradigma.constants.DataColumns attribute) FREQUENCY (paradigma.constants.DataUnits attribute)

G

GAIT_SEGMENT_NR (paradigma.constants.DataColumns attribute) GaitConfig (class in paradigma.config) gen_analytic() (paradigma.pipelines.pulse_rate_utils.TimeFreqDistr method) gen_doppler_lag_kern() (paradigma.pipelines.pulse_rate_utils.TimeFreqDistr method) gen_time_lag() (paradigma.pipelines.pulse_rate_utils.TimeFreqDistr method) get_analytic_signal() (paradigma.pipelines.pulse_rate_utils.TimeFreqDistr method) get_data_file_paths() (in module paradigma.load) get_end_iso8601() (in module paradigma.util) get_index() (paradigma.segmenting.WindowedDataExtractor method), [1] get_kern() (paradigma.pipelines.pulse_rate_utils.TimeFreqDistr method) get_slice() (paradigma.segmenting.WindowedDataExtractor method), [1]

get_win() (paradigma.pipelines.pulse_rate_utils.TimeFreqDistr method) get_window() (paradigma.pipelines.pulse_rate_utils.TimeFreqDistr method) GRAV_ACCELEROMETER_X (paradigma.constants.DataColumns attribute) GRAV_ACCELEROMETER_Y (paradigma.constants.DataColumns attribute) GRAV_ACCELEROMETER_Z (paradigma.constants.DataColumns attribute) GRAVITY (paradigma.constants.DataUnits attribute) gravity_colnames (paradigma.config.IMUConfig attribute) gyroscope_colnames (paradigma.config.IMUConfig attribute) GYROSCOPE_X (paradigma.constants.DataColumns attribute) GYROSCOPE_Y (paradigma.constants.DataColumns attribute) GYROSCOPE_Z (paradigma.constants.DataColumns attribute)

I

IMUConfig (class in paradigma.config)

inverse_melscale() (in module paradigma.feature_extraction) invert_watch_side() (in module paradigma.util)

K

KURTOSIS (paradigma.constants.DataColumns attribute)

L

load() (paradigma.classification.ClassifierPackage class method) load_axivity_data() (in module paradigma.load) load_data_files() (in module paradigma.load) load_empatica_data() (in module paradigma.load) load_metadata_list() (in module paradigma.util) load_prepared_data() (in module paradigma.load) load_single_data_file() (in module paradigma.load) load_tsdf_data() (in module paradigma.load)

load_tsdf_dataframe() (in module paradigma.util) logger (in module paradigma.load) (in module paradigma.orchestrator) (in module paradigma.pipelines.gait_pipeline) (in module paradigma.prepare_data) (in module paradigma.preprocessing) (in module paradigma.segmenting) lower_cutoff_frequency (paradigma.config.IMUConfig attribute) (paradigma.config.PPGConfig attribute)

M

max_segment_gap_s (paradigma.config.GaitConfig attribute) (paradigma.config.IMUConfig attribute) MEAN (paradigma.constants.DataColumns attribute) MEDIAN (paradigma.constants.DataColumns attribute) melscale() (in module paradigma.feature_extraction) merge_predictions_with_timestamps() (in module paradigma.util) meta_filename (paradigma.config.BaseConfig attribute) mfcc_high_frequency (paradigma.config.GaitConfig attribute) mfcc_low_frequency (paradigma.config.GaitConfig attribute) mfcc_n_coefficients (paradigma.config.GaitConfig attribute) mfcc_n_dct_filters (paradigma.config.GaitConfig attribute) min_segment_length_s (paradigma.config.GaitConfig attribute) (paradigma.config.IMUConfig attribute) module paradigma paradigma.classification paradigma.config paradigma.constants paradigma.feature_extraction paradigma.load paradigma.orchestrator paradigma.pipelines paradigma.pipelines.gait_pipeline paradigma.pipelines.pulse_rate_pipeline paradigma.pipelines.pulse_rate_utils paradigma.pipelines.tremor_pipeline paradigma.prepare_data paradigma.preprocessing paradigma.segmenting paradigma.testing paradigma.util

movement_threshold (paradigma.config.TremorConfig attribute) multiply_kernel_signal() (paradigma.pipelines.pulse_rate_utils.TimeFreqDistr method)

N

n_coefficients_mfcc (paradigma.config.TremorConfig attribute) n_dct_filters_mfcc (paradigma.config.TremorConfig attribute)

NONE (paradigma.constants.DataUnits attribute) nonsep_gdtfd() (paradigma.pipelines.pulse_rate_utils.TimeFreqDistr method)

O

overlap_fraction (paradigma.config.TremorConfig attribute)

P

pad_window() (paradigma.pipelines.pulse_rate_utils.TimeFreqDistr method) paradigma module paradigma.classification module paradigma.config module paradigma.constants module paradigma.feature_extraction module paradigma.load module paradigma.orchestrator module paradigma.pipelines module paradigma.pipelines.gait_pipeline module paradigma.pipelines.pulse_rate_pipeline module paradigma.pipelines.pulse_rate_utils module paradigma.pipelines.tremor_pipeline module paradigma.prepare_data module paradigma.preprocessing module paradigma.segmenting module paradigma.testing module

paradigma.util module parse_iso8601_to_datetime() (in module paradigma.util) pca_transform_gyroscope() (in module paradigma.feature_extraction) PEAK_VELOCITY (paradigma.constants.DataColumns attribute) POWER_RATIO (paradigma.constants.DataColumns attribute) POWER_ROTATION (paradigma.constants.DataUnits attribute) POWER_SPECTRAL_DENSITY_ACC (paradigma.constants.DataUnits attribute) PPG (paradigma.constants.DataColumns attribute) ppg_colname (paradigma.config.PPGConfig attribute) ppg_sampling_frequency (paradigma.config.PulseRateConfig attribute) PPGConfig (class in paradigma.config) PRED_ARM_AT_REST (paradigma.constants.DataColumns attribute) PRED_GAIT (paradigma.constants.DataColumns attribute) PRED_GAIT_PROBA (paradigma.constants.DataColumns attribute) PRED_NO_OTHER_ARM_ACTIVITY (paradigma.constants.DataColumns attribute) PRED_NO_OTHER_ARM_ACTIVITY_PROBA (paradigma.constants.DataColumns attribute) PRED_SQA (paradigma.constants.DataColumns attribute) PRED_SQA_ACC_LABEL (paradigma.constants.DataColumns attribute) PRED_SQA_PROBA (paradigma.constants.DataColumns attribute) PRED_TREMOR_CHECKED (paradigma.constants.DataColumns attribute) PRED_TREMOR_LOGREG (paradigma.constants.DataColumns attribute) PRED_TREMOR_PROBA (paradigma.constants.DataColumns attribute) predict() (paradigma.classification.ClassifierPackage method) predict_proba() (paradigma.classification.ClassifierPackage method) prepare_raw_data() (in module paradigma.prepare_data) prepare_time_column() (in module paradigma.prepare_data) preprocess_imu_data() (in module paradigma.preprocessing) preprocess_imu_data_io() (in module paradigma.testing) preprocess_ppg_data() (in module paradigma.preprocessing) preprocess_ppg_data_io() (in module paradigma.testing) PULSE_RATE (paradigma.constants.DataColumns attribute) PulseRateConfig (class in paradigma.config)

Q

quantify_arm_swing() (in module paradigma.pipelines.gait_pipeline)

R

RANGE_OF_MOTION (paradigma.constants.DataColumns attribute) read_metadata() (in module paradigma.util) RELATIVE_MS (paradigma.constants.TimeUnit attribute) RELATIVE_POWER (paradigma.constants.DataColumns attribute) RELATIVE_S (paradigma.constants.TimeUnit attribute) remove_moving_average_angle() (in module paradigma.feature_extraction) resample_data() (in module paradigma.preprocessing)

resampling_frequency (paradigma.config.IMUConfig attribute) (paradigma.config.PPGConfig attribute) ROTATION (paradigma.constants.DataUnits attribute) rotation_units (paradigma.config.IMUConfig attribute) run_gait_pipeline() (in module paradigma.pipelines.gait_pipeline) run_paradigma() (in module paradigma.orchestrator) run_pulse_rate_pipeline() (in module paradigma.pipelines.pulse_rate_pipeline) run_tremor_pipeline() (in module paradigma.pipelines.tremor_pipeline)

S

sampling_frequency (paradigma.config.IMUConfig attribute) (paradigma.config.PPGConfig attribute) save() (paradigma.classification.ClassifierPackage method) save_prepared_data() (in module paradigma.load) scaler (paradigma.classification.ClassifierPackage attribute) SECOND_HIGHEST_PEAK (paradigma.constants.DataColumns attribute) SEGMENT_CAT (paradigma.constants.DataColumns attribute) segment_length_psd_s (paradigma.config.TremorConfig attribute) segment_length_spectrogram_s (paradigma.config.TremorConfig attribute) SEGMENT_NR (paradigma.constants.DataColumns attribute) select_days() (in module paradigma.util) select_hours() (in module paradigma.util)

set_filenames() (paradigma.config.BaseConfig method) set_sensor() (paradigma.config.BaseConfig method) (paradigma.config.PulseRateConfig method) shift_window() (paradigma.pipelines.pulse_rate_utils.TimeFreqDistr method) SIGNAL_NOISE_RATIO (paradigma.constants.DataColumns attribute) signal_quality_classification() (in module paradigma.pipelines.pulse_rate_pipeline) SKEWNESS (paradigma.constants.DataColumns attribute) SPECTRAL_ENTROPY (paradigma.constants.DataColumns attribute) spectral_resolution (paradigma.config.TremorConfig attribute) spectrum_high_frequency (paradigma.config.GaitConfig attribute) spectrum_low_frequency (paradigma.config.GaitConfig attribute) standardize_column_names() (in module paradigma.prepare_data)

T

tabulate_windows() (in module paradigma.segmenting) tabulate_windows_legacy() (in module paradigma.segmenting) threshold (paradigma.classification.ClassifierPackage attribute) threshold_sqa (paradigma.config.PulseRateConfig attribute) threshold_sqa_accelerometer (paradigma.config.PulseRateConfig attribute) TIME (paradigma.constants.DataColumns attribute) time_colname (paradigma.config.IMUConfig attribute) (paradigma.config.PPGConfig attribute)

time_filename (paradigma.config.BaseConfig attribute) TimeFreqDistr (class in paradigma.pipelines.pulse_rate_utils) TimeUnit (class in paradigma.constants) tolerance (paradigma.config.IMUConfig attribute) (paradigma.config.PPGConfig attribute) transform_features() (paradigma.classification.ClassifierPackage method) transform_time_array() (in module paradigma.util) TREMOR_POWER (paradigma.constants.DataColumns attribute) TremorConfig (class in paradigma.config)

U

UNIX_TICKS_MS (in module paradigma.constants) update_scaler() (paradigma.classification.ClassifierPackage method)

upper_cutoff_frequency (paradigma.config.IMUConfig attribute) (paradigma.config.PPGConfig attribute)

V

validate_prepared_data() (in module paradigma.prepare_data) values_filename (paradigma.config.BaseConfig attribute)

VARIANCE (paradigma.constants.DataColumns attribute) VELOCITY (paradigma.constants.DataColumns attribute)

W

window_length_s (paradigma.config.PulseRateConfig attribute) (paradigma.config.TremorConfig attribute) window_overlap_s (paradigma.config.PulseRateConfig attribute) window_step_length_s (paradigma.config.PulseRateConfig attribute) (paradigma.config.TremorConfig attribute)

window_type (paradigma.config.GaitConfig attribute) (paradigma.config.TremorConfig attribute) WindowedDataExtractor (class in paradigma.segmenting) write_df_data() (in module paradigma.util) write_np_data() (in module paradigma.util)